source: general/prog/pdl.xml@ b307885b

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Last change on this file since b307885b was b307885b, checked in by Randy McMurchy <randy@…>, 18 years ago

Modifications to the PDL instructions: added an FTP download location, rewrite of the introductory text to include a discussion about a proper version of Fortran, updated some of the dependency package download URLs and changed the links to a Fortran compiler to the one on the BLFS Wiki

git-svn-id: svn://svn.linuxfromscratch.org/BLFS/trunk/BOOK@5926 af4574ff-66df-0310-9fd7-8a98e5e911e0
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File size: 22.0 KB
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1<?xml version="1.0" encoding="ISO-8859-1"?>
2<!DOCTYPE sect1 PUBLIC "-//OASIS//DTD DocBook XML V4.4//EN"
3 "http://www.oasis-open.org/docbook/xml/4.4/docbookx.dtd" [
4 <!ENTITY % general-entities SYSTEM "../../general.ent">
5 %general-entities;
6
7 <!ENTITY pdl-download-http "http://prdownloads.sourceforge.net/pdl/PDL-&pdl-version;.tar.gz">
8 <!ENTITY pdl-download-ftp "ftp://ftp.fu-berlin.de/unix/linux/mirrors/gentoo/distfiles/PDL-&pdl-version;.tar.gz">
9 <!ENTITY pdl-md5sum "edd056a006eae8b46e8ef804b9774a93">
10 <!ENTITY pdl-size "2.1 MB">
11 <!ENTITY pdl-buildsize "74 MB">
12 <!ENTITY pdl-time "2.56 SBU">
13]>
14
15<sect1 id="pdl" xreflabel="PDL">
16 <?dbhtml filename="pdl.html" ?>
17
18 <sect1info>
19 <othername>$LastChangedBy$</othername>
20 <date>$Date$</date>
21 <keywordset>
22 <keyword role="package">PDL-&pdl-version;.tar</keyword>
23 <keyword role="ftpdir">PDL</keyword>
24 </keywordset>
25 </sect1info>
26
27 <title>PDL-&pdl-version;</title>
28
29 <indexterm zone="pdl">
30 <primary sortas="a-PDL">PDL</primary>
31 </indexterm>
32
33 <sect2 role="package">
34 <title>Introduction to PDL</title>
35
36 <para><application>PDL</application> (Perl Data Language) gives
37 standard <application>Perl</application> the ability to compactly store
38 and quickly manipulate the large N-dimensional data arrays common to
39 scientific computing. <application>PDL</application> turns
40 <application>Perl</application> into an array-oriented, numerical language
41 similar to such commercial packages as <application>IDL</application>
42 and <application>MatLab</application>. One can write simple
43 <application>Perl</application> expressions to manipulate entire numerical
44 arrays all at once.</para>
45
46 <para><application>PDL</application> provides extensive numerical and
47 semi-numerical functionality with support for two- and three-dimensional
48 visualisation as well as a variety of I/O formats. The goal is to allow
49 <application>PDL</application> to interact with a variety of external
50 numerical packages, graphics and visualisation systems. Easy interfacing
51 to such systems is one of the core design features of
52 <application>PDL</application>.</para>
53
54 <bridgehead renderas="sect3">Package Information</bridgehead>
55 <itemizedlist spacing="compact">
56 <listitem>
57 <para>Download (HTTP): <ulink url="&pdl-download-http;"/></para>
58 </listitem>
59 <listitem>
60 <para>Download (FTP): <ulink url="&pdl-download-ftp;"/></para>
61 </listitem>
62 <listitem>
63 <para>Download MD5 sum: &pdl-md5sum;</para>
64 </listitem>
65 <listitem>
66 <para>Download size: &pdl-size;</para>
67 </listitem>
68 <listitem>
69 <para>Estimated disk space required: &pdl-buildsize;</para>
70 </listitem>
71 <listitem>
72 <para>Estimated build time: &pdl-time;</para>
73 </listitem>
74 </itemizedlist>
75
76 <bridgehead renderas="sect3">PDL Dependencies</bridgehead>
77
78 <para><application>PDL</application> is a collection of over 90
79 <application>Perl</application> modules. Some of these modules require
80 additional libraries, packages and/or <application>Perl</application>
81 modules for full functionality. Listed below are the modules which require
82 additional software or configuration. If you don't need a particular
83 module's functionality, you don't need to install its dependencies. The
84 dependency tree for each module is listed downward, meaning you'll need to
85 start at the bottom of a module's tree and work up. The dependencies are
86 listed in the same order as they are in the
87 <filename>DEPENDENCIES</filename> file, found in the package source
88 tree.</para>
89
90 <para>This package (and many of the dependency packages) requires a Fortran
91 compiler for full functionality of all the different modules. The
92 <command>gfortran</command> compiler installed with the current BLFS
93 version of <application>GCC</application> (&gcc-version;) will not work. If
94 you want to compile the parts of this package that require a Fortran
95 compiler, you'll need to install a
96 <application>GCC</application>-3.x.x version of Fortran. The
97 <application>GCC</application> developers recommend using Fortran from
98 <application>GCC</application>-3.4.6. You can find specific instructions
99 to install a <application>GCC</application>-3.4.6 compiler on the
100 <ulink url="http://wiki.linuxfromscratch.org/blfs/wiki/gcc3">BLFS
101 Wiki</ulink>. Alternatively, if you have a need to install
102 <xref linkend="gcc3"/>, you can add the Fortran compiler to the list of
103 compilers installed in those instructions. Don't forget to put the
104 directory containing the <command>{g,f}77</command> commands at the
105 beginning of your <envar>PATH</envar> environment variable before
106 beginning the compilation.</para>
107
108 <bridgehead renderas="sect4">PDL::NiceSlice</bridgehead>
109
110 <para>The <application>PDL</application>::NiceSlice module is used to
111 enhance <application>PDL</application>'s slice syntax.
112 <quote>Slicing</quote> is a term used in the process of creating a
113 cross-section, or slice, of a <application>PDL</application> object
114 (piddle).</para>
115
116 <itemizedlist spacing='compact'>
117 <listitem>
118 <para><ulink
119 url="http://www.cpan.org/authors/id/P/PM/PMQS/Filter-&Filter-version;.tar.gz">
120 Filter-&Filter-version;</ulink></para>
121 </listitem>
122 </itemizedlist>
123
124 <bridgehead renderas="sect4">Inline::Pdlpp</bridgehead>
125
126 <para>The Inline::Pdlpp module allows you to define fast PP
127 code inline in your scripts.</para>
128
129 <itemizedlist spacing='compact'>
130 <listitem>
131 <para><ulink
132 url="http://www.cpan.org/authors/id/I/IN/INGY/Inline-&Inline-version;.tar.gz">
133 Inline-&Inline-version;</ulink></para>
134 <itemizedlist>
135 <listitem>
136 <para><ulink
137 url="http://www.cpan.org/authors/id/D/DC/DCONWAY/Parse-RecDescent-&Parse-RecDescent-version;.tar.gz">
138 Parse-RecDescent-&Parse-RecDescent-version;</ulink></para>
139 </listitem>
140 </itemizedlist>
141 </listitem>
142 </itemizedlist>
143
144 <bridgehead renderas="sect4">Perldl</bridgehead>
145
146 <para><command>perldl</command> is a simple shell (written in
147 <application>Perl</application>) which allows interactive
148 use of <application>PDL</application>.</para>
149
150 <itemizedlist spacing='compact'>
151 <listitem>
152 <para><ulink
153 url="http://www.cpan.org/authors/id/H/HA/HAYASHI/Term-ReadLine-Gnu-&Term-ReadLine-Gnu-version;.tar.gz">
154 Term-ReadLine-Gnu-&Term-ReadLine-Gnu-version;</ulink></para>
155 </listitem>
156 </itemizedlist>
157
158 <bridgehead renderas="sect4">PDL::Graphics::TriD</bridgehead>
159
160 <para>The <application>PDL</application>::Graphics::TriD module implements
161 a generic 3D plotting interface for <application>PDL</application>. Points,
162 lines and surfaces (among other objects) are supported.</para>
163
164 <itemizedlist spacing='compact'>
165 <listitem>
166 <para>OpenGL (<xref linkend="x-window-system"/>)</para>
167 </listitem>
168 </itemizedlist>
169
170 <bridgehead renderas="sect4">PDL::Graphics::PGPLOT</bridgehead>
171
172 <para>The <application>PDL</application>::Graphics::PGPLOT module is a
173 convenience interface to the <application>PGPLOT</application> commands,
174 implemented using the object oriented <application>PGPLOT</application>
175 plotting package in the PDL::Graphics::PGPLOT::Window module.</para>
176
177 <itemizedlist spacing='compact'>
178 <listitem>
179 <para><ulink
180 url="http://www.cpan.org/authors/id/K/KG/KGB/PGPLOT-&PGPLOT-perl-version;.tar.gz">
181 PGPLOT-&PGPLOT-perl-version;</ulink></para>
182 <itemizedlist>
183 <listitem>
184 <para><ulink
185 url="http://www.cpan.org/authors/id/K/KG/KGB/ExtUtils-F77-&ExtUtils-F77-version;.tar.gz">
186 ExtUtils-F77-&ExtUtils-F77-version;</ulink></para>
187 <itemizedlist>
188 <listitem>
189 <para><ulink
190 url="http://wiki.linuxfromscratch.org/blfs/wiki/gcc3">a Fortran
191 compiler</ulink></para>
192 </listitem>
193 </itemizedlist>
194 </listitem>
195 <listitem>
196 <para><ulink
197 url="http://astro.caltech.edu/~tjp/pgplot/">PGPLOT</ulink></para>
198 <itemizedlist>
199 <listitem>
200 <para><xref linkend="x-window-system"/>,
201 <xref linkend="lesstif"/>,
202 <xref linkend="tk"/>, and <ulink
203 url="http://wiki.linuxfromscratch.org/blfs/wiki/gcc3">a Fortran
204 compiler</ulink></para>
205 </listitem>
206 </itemizedlist>
207 </listitem>
208 </itemizedlist>
209 </listitem>
210 </itemizedlist>
211
212 <bridgehead renderas="sect4">PDL::Graphics::PLPLOT</bridgehead>
213
214 <para>The <application>PDL</application>::Graphics::PLPLOT module is a
215 simple interface to the <application>PLplot</application> plotting library.</para>
216
217 <itemizedlist spacing='compact'>
218 <listitem>
219 <para><ulink url="http://plplot.sourceforge.net/">PLplot</ulink></para>
220 <itemizedlist>
221 <listitem>
222 <para><xref linkend="pkgconfig"/>,
223 <xref linkend="x-window-system"/>,
224 <xref linkend="GTK"/>,
225 <xref linkend="freetype2"/>,
226 <ulink url="http://www.boutell.com/gd/">GD</ulink>,
227 <ulink url="http://www.svgalib.org/">SVGAlib</ulink>,
228 <xref linkend="gnome-libs"/>,
229 <xref linkend="jdk"/>,
230 <xref linkend="tk"/>,
231 <xref linkend="python"/> (with
232 <ulink url="http://www.numpy.org/">Numeric Python</ulink>),
233 <ulink url="http://wiki.linuxfromscratch.org/blfs/wiki/gcc3">a
234 Fortran compiler</ulink>,
235 <ulink url="http://www.swig.org/">SWIG</ulink>, and
236 <ulink url="http://sourceforge.net/projects/incrtcl/">iTcl</ulink></para>
237 </listitem>
238 </itemizedlist>
239 </listitem>
240 </itemizedlist>
241
242 <bridgehead renderas="sect4">PDL::Graphics::IIS</bridgehead>
243
244 <para>The <application>PDL</application>::Graphics::IIS
245 module provides an interface to any image display <quote>device</quote>
246 which supports the <quote>IIS protocol</quote>.</para>
247
248 <itemizedlist spacing='compact'>
249 <listitem>
250 <para><ulink
251 url="http://tdc-www.harvard.edu/software/saoimage.html">SAOimage</ulink></para>
252 <itemizedlist>
253 <listitem>
254 <para><xref linkend="x-window-system"/></para>
255 </listitem>
256 </itemizedlist>
257 </listitem>
258 <listitem>
259 <para><ulink
260 url="http://iraf.noao.edu/iraf/web/projects/x11iraf/x11iraf.html">X11
261 IRAF</ulink></para>
262 <itemizedlist>
263 <listitem>
264 <para><xref linkend="x-window-system"/> and
265 <xref linkend="tk"/></para>
266 </listitem>
267 </itemizedlist>
268 </listitem>
269 </itemizedlist>
270
271 <bridgehead renderas="sect4">PDL::Graphics::Karma</bridgehead>
272
273 <para>The <application>PDL</application>::Graphics::Karma
274 module is an interface to <application>Karma</application> visualisation
275 applications.</para>
276
277 <itemizedlist spacing='compact'>
278 <listitem>
279 <para><ulink
280 url="http://www.atnf.csiro.au/computing/software/karma/">Karma</ulink></para>
281 <itemizedlist>
282 <listitem>
283 <para><xref linkend="x-window-system"/></para>
284 </listitem>
285 </itemizedlist>
286 </listitem>
287 </itemizedlist>
288
289 <para><emphasis>Note:</emphasis> You may need to modify the
290 <option>WHERE_KARMA =&gt; undef</option> line in the source tree
291 <filename>perldl.conf</filename> file to point to your installation
292 of <application>Karma</application></para>
293
294 <bridgehead renderas="sect4">PDL::IO::Pic</bridgehead>
295
296 <para> The <application>PDL</application>::IO::Pic module implements I/O
297 for a number of popular image formats by exploiting the
298 <command>xxxtopnm</command> and <command>pnmtoxxx</command>
299 converters from the <application>Netpbm</application> package and the
300 <command>cjpeg</command> and <command>djpeg</command> converters.
301 It also contains the routine wmpeg to write MPEG movies from piddles
302 representing image stacks.</para>
303
304 <itemizedlist spacing='compact'>
305 <listitem>
306 <para><ulink url="http://netpbm.sourceforge.net/">Netpbm</ulink>,
307 <xref linkend="libjpeg"/> and
308 <ulink url="ftp://mm-ftp.cs.berkeley.edu/pub/multimedia/mpeg/encode/">
309 mpeg_encode</ulink></para>
310 </listitem>
311 </itemizedlist>
312
313 <bridgehead renderas="sect4">PDL::Slatec</bridgehead>
314
315 <para> The <application>PDL</application>::Slatec module serves the dual
316 purpose of providing an interface to parts of the slatec library and showing
317 how to interface <application>PDL</application> to an external library.
318 The module provides routines to manipulate matrices, calculate FFTs, fit
319 data using polynomials, and interpolate/integrate data using piecewise
320 cubic Hermite interpolation.</para>
321
322 <itemizedlist spacing='compact'>
323 <listitem>
324 <para><ulink
325 url="http://www.cpan.org/authors/id/K/KG/KGB/ExtUtils-F77-&ExtUtils-F77-version;.tar.gz">
326 ExtUtils-F77-&ExtUtils-F77-version;</ulink></para>
327 <itemizedlist>
328 <listitem>
329 <para><ulink
330 url="http://wiki.linuxfromscratch.org/blfs/wiki/gcc3">a Fortran
331 compiler</ulink></para>
332 </listitem>
333 </itemizedlist>
334 </listitem>
335 </itemizedlist>
336
337 <bridgehead renderas="sect4">PDL::GSL</bridgehead>
338
339 <para> The <application>PDL</application>::<application>GSL</application>
340 module is an interface to the functions provided by the Gnu Scientific Library.</para>
341
342 <itemizedlist spacing='compact'>
343 <listitem>
344 <para><ulink url="http://www.gnu.org/software/gsl/">GSL</ulink></para>
345 </listitem>
346 </itemizedlist>
347
348 <bridgehead renderas="sect4">PDL::FFTW</bridgehead>
349
350 <para> The <application>PDL</application>::<application>FFTW</application>
351 module is a means to interface <application>PDL</application> with the
352 <application>FFTW</application> library. It's similar to the standard FFT
353 routine but it's usually faster and has support for real transforms. It works
354 well for the types of piddles for which the library was compiled (otherwise it
355 must do conversions).</para>
356
357 <itemizedlist spacing='compact'>
358 <listitem>
359 <para><ulink url="http://www.fftw.org/">FFTW-2.x</ulink></para>
360 </listitem>
361 </itemizedlist>
362
363 <bridgehead renderas="sect4">PDL::IO::Browser</bridgehead>
364
365 <para>The <application>PDL</application>::IO::Browser module
366 is a 2D cursor terminal data browser for piddles.</para>
367
368 <para>There is no additional software required to use the module. However,
369 the default is to not install the module because some platforms don't provide
370 a curses compatible library. To enable the module, issue the following
371 command:</para>
372
373<screen><userinput>sed -i -e "s/WITH_IO_BROWSER =&gt; 0/WITH_IO_BROWSER =&gt; 1/" \
374 perldl.conf</userinput></screen>
375
376 <bridgehead renderas="sect4">PDL::IO::NDF</bridgehead>
377
378 <para>The <application>PDL</application>::IO::NDF module adds the ability to
379 read and write Starlink N-dimensional data files as N-dimensional piddles.</para>
380
381 <itemizedlist spacing='compact'>
382 <listitem>
383 <para><ulink
384 url="http://www.cpan.org/authors/id/A/AA/AALLAN/Astro-FITS-Header-&Astro-FITS-Header-version;.tar.gz">
385 Astro-FITS-Header-&Astro-FITS-Header-version;</ulink></para>
386 <itemizedlist>
387 <listitem>
388 <para><ulink
389 url="http://www.cpan.org/authors/id/P/PR/PRATZLAFF/Astro-FITS-CFITSIO-&Astro-FITS-CFITSIO-version;.tar.gz">
390 Astro-FITS-CFITSIO-&Astro-FITS-CFITSIO-version;</ulink></para>
391 <itemizedlist>
392 <listitem>
393 <para><ulink
394 url="http://heasarc.gsfc.nasa.gov/docs/software/fitsio/">CFITSIO</ulink></para>
395 </listitem>
396 </itemizedlist>
397 </listitem>
398 <listitem>
399 <para><ulink
400 url="ftp://ftp.starlink.rl.ac.uk/pub/ussc/store/starperl/starperl.tar.Z">
401 NDF-&NDF-version;</ulink></para>
402 <itemizedlist>
403 <listitem>
404 <para><ulink
405 url="ftp://ftp.starlink.rl.ac.uk/pub/ussc/store/starperl/starperl.tar.Z">
406 Starlink-Config-&Starlink-Config-version;</ulink></para>
407 <itemizedlist>
408 <listitem>
409 <para><ulink url="http://star-www.rl.ac.uk/">Starlink IMG</ulink></para>
410 <itemizedlist>
411 <listitem>
412 <para><ulink url="http://star-www.rl.ac.uk/">Starlink NDF</ulink></para>
413 <itemizedlist>
414 <listitem>
415 <para><ulink
416 url="http://wiki.linuxfromscratch.org/blfs/wiki/gcc3">a
417 Fortran compiler</ulink></para>
418 </listitem>
419 </itemizedlist>
420 </listitem>
421 </itemizedlist>
422 </listitem>
423 </itemizedlist>
424 </listitem>
425 </itemizedlist>
426 </listitem>
427 <listitem>
428 <para><ulink
429 url="ftp://ftp.starlink.rl.ac.uk/pub/ussc/store/starperl/starperl.tar.Z">
430 GSD-&GSD-version;</ulink></para>
431 <itemizedlist>
432 <listitem>
433 <para><ulink
434 url="ftp://ftp.starlink.rl.ac.uk/pub/ussc/store/starperl/starperl.tar.Z">
435 Starlink-Config-&Starlink-Config-version;</ulink></para>
436 <itemizedlist>
437 <listitem>
438 <para><ulink
439 url="http://star-www.rl.ac.uk/">Starlink GSD</ulink></para>
440 <itemizedlist>
441 <listitem>
442 <para><ulink
443 url="http://wiki.linuxfromscratch.org/blfs/wiki/gcc3">a
444 Fortran compiler</ulink></para>
445 </listitem>
446 </itemizedlist>
447 </listitem>
448 </itemizedlist>
449 </listitem>
450 </itemizedlist>
451 </listitem>
452 </itemizedlist>
453 </listitem>
454 </itemizedlist>
455
456 <para condition="html" role="usernotes">User Notes:
457 <ulink url="&blfs-wiki;/pdl"/></para>
458
459 </sect2>
460
461 <sect2 role="installation">
462 <title>Installation of PDL</title>
463
464 <para>Install <application>PDL</application> (and all the dependency
465 <application>Perl</application> modules) by running the following commands:</para>
466
467<screen><userinput>perl Makefile.PL &amp;&amp;
468make &amp;&amp;
469make test</userinput></screen>
470
471 <para>Now, as the <systemitem class="username">root</systemitem> user:</para>
472
473<screen role="root"><userinput>make install</userinput></screen>
474
475 </sect2>
476
477 <sect2 role="configuration">
478 <title>Configuring PDL</title>
479
480 <sect3 id="pdl-config">
481 <title>Config Files</title>
482
483 <para><filename>~/.perldlrc</filename> and
484 <filename>local.perldlrc</filename> in the current directory</para>
485
486 <indexterm zone="pdl pdl-config">
487 <primary sortas="e-AA.perldlrc">~/.perldlrc</primary>
488 </indexterm>
489
490 <indexterm zone="pdl pdl-config">
491 <primary sortas="e-local.perldlrc">local.perldlrc</primary>
492 </indexterm>
493
494 </sect3>
495
496 <sect3>
497 <title>Configuration Information</title>
498
499 <para>See <ulink
500 url="http://pdl.sourceforge.net/PDLdocs/perldl.html#the startup file ~/.perldlrc"/>
501 for information about configuring <command>perldl</command> to suit your
502 needs.</para>
503
504 </sect3>
505
506 </sect2>
507
508 <sect2 role="content">
509 <title>Contents</title>
510
511 <segmentedlist>
512 <segtitle>Installed Programs</segtitle>
513 <segtitle>Installed Modules</segtitle>
514 <segtitle>Installed Directories</segtitle>
515
516 <seglistitem>
517 <seg>pdl, pdldoc, perldl, and pptemplate</seg>
518 <seg>90+ individual <application>Perl</application> modules</seg>
519 <seg>/usr/lib/perl5/site_perl/&lfs-perl-version;/i686-linux/{,auto/}PDL</seg>
520 </seglistitem>
521 </segmentedlist>
522
523 <variablelist>
524 <bridgehead renderas="sect3">Short Descriptions</bridgehead>
525 <?dbfo list-presentation="list"?>
526 <?dbhtml list-presentation="table"?>
527
528 <varlistentry id="pdl-prog">
529 <term><command>pdl</command></term>
530 <listitem>
531 <para>is a binary program called from
532 <application>PDL</application> scripts which is used to
533 interface <command>perldl</command>.</para>
534 <indexterm zone="pdl pdl-prog">
535 <primary sortas="b-pdl">pdl</primary>
536 </indexterm>
537 </listitem>
538 </varlistentry>
539
540 <varlistentry id="pdldoc">
541 <term><command>pdldoc</command></term>
542 <listitem>
543 <para>is a shell interface to
544 <application>PDL</application> documentation.</para>
545 <indexterm zone="pdl pdldoc">
546 <primary sortas="b-pdldoc">pdldoc</primary>
547 </indexterm>
548 </listitem>
549 </varlistentry>
550
551 <varlistentry id="perldl">
552 <term><command>perldl</command></term>
553 <listitem>
554 <para>is a simple shell (written in <application>Perl</application>)
555 for interactive use of <application>PDL</application>.</para>
556 <indexterm zone="pdl perldl">
557 <primary sortas="b-perldl">perldl</primary>
558 </indexterm>
559 </listitem>
560 </varlistentry>
561
562 <varlistentry id="pptemplate">
563 <term><command>pptemplate</command></term>
564 <listitem>
565 <para>is a script to generate <filename>Makefile.PL</filename>
566 and PP file skeletons.</para>
567 <indexterm zone="pdl pptemplate">
568 <primary sortas="b-pptemplate">pptemplate</primary>
569 </indexterm>
570 </listitem>
571 </varlistentry>
572
573 </variablelist>
574
575 </sect2>
576
577</sect1>
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