patch for pine isn't patching location of pine.conf and pine.conf.fixed
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The pine-4.58-fhs.patch isn't patching the pine/osdep/os-lnx.h file properly. SYSTEM_PINERC and SYSTEM_PINERC_FIXED keep pointing to /usr/local/lib, while all the documentation is updated to use /etc. Hence all the documentation says the pine.conf files must go to /etc while the executable is looking in /usr/local/lib.
This is so fundamental I keep thinking I did something wrong somewhere. but fixing os-lnx.h as described above solved it for me.