mysql 4.0.20 doesn't configure against glibc 2.3.4
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One for the future, as it's not relevant for the current LFS release version (maybe you should put a "future" option in somewhere in the bug report screen!), however...
The configure script for mySQL greps for the string "Linuxthreads" in /usr/include/pthread.h
This string isn't present in the pthread.h shipping with glibc 2.3.4 (as used in LFS CVS).
Kludging the configure script to grep for something else (I used PTHREAD) makes it configure, build and run no problems.